IL_4U53_468

3D structure

PDB id

4U53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GCC*GUUGU

Length

8 nucleotides

Bulged bases

4U53|1|1|U|3354, 4U53|1|1|U|3355

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U53_468 not in the Motif Atlas

Geometric match to IL_6CZR_118

Geometric discrepancy: 0.232

The information below is about IL_6CZR_118

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

183

Unit IDs

4U53|1|1|G|3348
4U53|1|1|C|3349
4U53|1|1|C|3350
*
4U53|1|1|G|3353
4U53|1|1|U|3354
4U53|1|1|U|3355
4U53|1|1|G|3356
4U53|1|1|U|3357

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain N2

60S ribosomal protein L22-A

Chain S8

40S ribosomal protein S8-A