IL_4U53_477
3D structure
- PDB id
- 4U53 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GGGC*GUUCU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4U53_477 not in the Motif Atlas
- Geometric match to IL_4DB2_001
- Geometric discrepancy: 0.397
- The information below is about IL_4DB2_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_68909.1
- Basepair signature
- cWW-L-R-L-R-L-cWW
- Number of instances in this motif group
- 6
Unit IDs
4U53|1|5|G|171
4U53|1|5|G|172
4U53|1|5|G|173
4U53|1|5|C|174
*
4U53|1|5|G|244
4U53|1|5|U|245
4U53|1|5|U|246
4U53|1|5|C|247
4U53|1|5|U|248
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain M3
- 60S ribosomal protein L13-A
- Chain m3
- 60S ribosomal protein L13-A
- Chain o5
- 60S ribosomal protein L35-A
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