IL_4U53_486
3D structure
- PDB id
- 4U53 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- AGAUAAAAAAUCAAUGUCUUCGGACUCUUUG*CAU
- Length
- 34 nucleotides
- Bulged bases
- 4U53|1|6|U|232, 4U53|1|6|C|233, 4U53|1|6|U|240
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4U53|1|6|A|213
4U53|1|6|G|214
4U53|1|6|A|215
4U53|1|6|U|216
4U53|1|6|A|217
4U53|1|6|A|218
4U53|1|6|A|219
4U53|1|6|A|220
4U53|1|6|A|221
4U53|1|6|A|222
4U53|1|6|U|223
4U53|1|6|C|224
4U53|1|6|A|225
4U53|1|6|A|226
4U53|1|6|U|227
4U53|1|6|G|228
4U53|1|6|U|229
4U53|1|6|C|230
4U53|1|6|U|231
4U53|1|6|U|232
4U53|1|6|C|233
4U53|1|6|G|234
4U53|1|6|G|235
4U53|1|6|A|236
4U53|1|6|C|237
4U53|1|6|U|238
4U53|1|6|C|239
4U53|1|6|U|240
4U53|1|6|U|241
4U53|1|6|U|242
4U53|1|6|G|243
*
4U53|1|6|C|250
4U53|1|6|A|251
4U53|1|6|U|252
Current chains
- Chain 6
- 18S ribosomal RNA
Nearby chains
- Chain c1
- 40S ribosomal protein S11-A
- Chain s4
- 40S ribosomal protein S4-A
- Chain s6
- 40S ribosomal protein S6-A
- Chain s8
- 40S ribosomal protein S8-A
Coloring options: