IL_4U53_505

3D structure

PDB id

4U53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

AUAAGGA*UUU

Length

10 nucleotides

Bulged bases

4U53|1|2|G|1228

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U53|1|2|A|1224
4U53|1|2|U|1225
4U53|1|2|A|1226
4U53|1|2|A|1227
4U53|1|2|G|1228
4U53|1|2|G|1229
4U53|1|2|A|1230
*
4U53|1|2|U|1257
4U53|1|2|U|1258
4U53|1|2|U|1259

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C0

40S ribosomal protein S10-A

Chain C2

40S ribosomal protein S12

Chain E1

Ubiquitin-40S ribosomal protein S31