IL_4U55_175

3D structure

PDB id

4U55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Cryptopleurine bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GAC*GUUU

Length

7 nucleotides

Bulged bases

4U55|1|2|U|959

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U55_175 not in the Motif Atlas

Geometric match to IL_6CZR_128

Geometric discrepancy: 0.245

The information below is about IL_6CZR_128

Detailed Annotation

Single bulged G, near cWW

Broad Annotation

Single bulged G, near cWW

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

4U55|1|2|G|868
4U55|1|2|A|869
4U55|1|2|C|870
*
4U55|1|2|G|957
4U55|1|2|U|958
4U55|1|2|U|959
4U55|1|2|U|960

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C3

40S ribosomal protein S13

Chain D2

40S ribosomal protein S22-A

Chain D7

40S ribosomal protein S27-A