IL_4U55_280
3D structure
- PDB id
- 4U55 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Cryptopleurine bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- AUA*UU
- Length
- 5 nucleotides
- Bulged bases
- 4U55|1|5|U|1181
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4U55_280 not in the Motif Atlas
- Geometric match to IL_5TBW_050
- Geometric discrepancy: 0.0802
- The information below is about IL_5TBW_050
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_83039.19
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 123
Unit IDs
4U55|1|5|A|1180
4U55|1|5|U|1181
4U55|1|5|A|1182
*
4U55|1|5|U|1324
4U55|1|5|U|1325
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain l7
- 60S ribosomal protein L7-A
- Chain m4
- 60S ribosomal protein L14-A
- Chain m6
- 60S ribosomal protein L16-A
- Chain n0
- 60S ribosomal protein L20-A
- Chain o3
- 60S ribosomal protein L33-A
Coloring options: