IL_4U55_286

3D structure

PDB id

4U55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Cryptopleurine bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

4U55|1|5|A|1263

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U55_286 not in the Motif Atlas

Geometric match to IL_5D8H_003

Geometric discrepancy: 0.1629

The information below is about IL_5D8H_003

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_51387.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

20

Unit IDs

4U55|1|5|G|1262
4U55|1|5|A|1263
4U55|1|5|G|1264
4U55|1|5|U|1265
4U55|1|5|G|1266
*
4U55|1|5|C|1275
4U55|1|5|U|1276
4U55|1|5|C|1277

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain m2

Unknown protein chain m2