IL_4U55_506

3D structure

PDB id

4U55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Cryptopleurine bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UUCCG*UGA

Length

8 nucleotides

Bulged bases

4U55|1|5|C|1016, 4U55|1|5|C|1017

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U55_506 not in the Motif Atlas

Homologous match to IL_8CRE_477

Geometric discrepancy: 0.5523

The information below is about IL_8CRE_477

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

4U55|1|5|U|1014
4U55|1|5|U|1015
4U55|1|5|C|1016
4U55|1|5|C|1017
4U55|1|5|G|1018
*
4U55|1|5|U|1034
4U55|1|5|G|1035
4U55|1|5|A|1036

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain l5

60S ribosomal protein L5

Chain m1

60S ribosomal protein L11-B

Chain sM

Suppressor protein STM1