IL_4U56_120
3D structure
- PDB id
- 4U56 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Blasticidin S bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.45 Å
Loop
- Sequence
- GAUUAU*AGAAUC
- Length
- 12 nucleotides
- Bulged bases
- 4U56|1|1|A|3130
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4U56_120 not in the Motif Atlas
- Geometric match to IL_7RQB_107
- Geometric discrepancy: 0.1814
- The information below is about IL_7RQB_107
- Detailed Annotation
- UAA/GAN with extra cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_49767.5
- Basepair signature
- cWW-cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
4U56|1|1|G|3102
4U56|1|1|A|3103
4U56|1|1|U|3104
4U56|1|1|U|3105
4U56|1|1|A|3106
4U56|1|1|U|3107
*
4U56|1|1|A|3127
4U56|1|1|G|3128
4U56|1|1|A|3129
4U56|1|1|A|3130
4U56|1|1|U|3131
4U56|1|1|C|3132
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain L9
- 60S ribosomal protein L9-A
- Chain M6
- 60S ribosomal protein L16-A
- Chain Q0
- Ubiquitin-60S ribosomal protein L40
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