IL_4U56_171

3D structure

PDB id

4U56 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Blasticidin S bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GAAAAAAUUA*UAUAUUAGC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U56|1|2|G|751
4U56|1|2|A|752
4U56|1|2|A|753
4U56|1|2|A|754
4U56|1|2|A|755
4U56|1|2|A|756
4U56|1|2|A|757
4U56|1|2|U|758
4U56|1|2|U|759
4U56|1|2|A|760
*
4U56|1|2|U|790
4U56|1|2|A|791
4U56|1|2|U|792
4U56|1|2|A|793
4U56|1|2|U|794
4U56|1|2|U|795
4U56|1|2|A|796
4U56|1|2|G|797
4U56|1|2|C|798

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C1

40S ribosomal protein S11-A

Chain D2

40S ribosomal protein S22-A

Chain S4

40S ribosomal protein S4-A

Chain S9

40S ribosomal protein S9-A