IL_4U56_178
3D structure
- PDB id
- 4U56 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Blasticidin S bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.45 Å
Loop
- Sequence
- UUGUCAG*CUUGGAUUUA
- Length
- 17 nucleotides
- Bulged bases
- 4U56|1|2|G|913
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4U56_178 not in the Motif Atlas
- Homologous match to IL_8C3A_440
- Geometric discrepancy: 0.3052
- The information below is about IL_8C3A_440
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_22252.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
4U56|1|2|U|893
4U56|1|2|U|894
4U56|1|2|G|895
4U56|1|2|U|896
4U56|1|2|C|897
4U56|1|2|A|898
4U56|1|2|G|899
*
4U56|1|2|C|910
4U56|1|2|U|911
4U56|1|2|U|912
4U56|1|2|G|913
4U56|1|2|G|914
4U56|1|2|A|915
4U56|1|2|U|916
4U56|1|2|U|917
4U56|1|2|U|918
4U56|1|2|A|919
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain C4
- 40S ribosomal protein S14-A
- Chain S1
- 40S ribosomal protein S1-A
Coloring options: