IL_4U67_025
3D structure
- PDB id
- 4U67 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.65 Å
Loop
- Sequence
- CUGUAG*CGAAGG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4U67_025 not in the Motif Atlas
- Homologous match to IL_7A0S_027
- Geometric discrepancy: 0.0987
- The information below is about IL_7A0S_027
- Detailed Annotation
- 5x5 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_81631.1
- Basepair signature
- cWW-L-R-cSH-R-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
4U67|1|X|C|870
4U67|1|X|U|871
4U67|1|X|G|872
4U67|1|X|U|873
4U67|1|X|A|874
4U67|1|X|G|875
*
4U67|1|X|C|927
4U67|1|X|G|928
4U67|1|X|A|929
4U67|1|X|A|930
4U67|1|X|G|931
4U67|1|X|G|932
Current chains
- Chain X
- 23s RNA
Nearby chains
- Chain J
- 50S ribosomal protein L16
- Chain T
- 50S ribosomal protein L27
- Chain W
- 50S ribosomal protein L30
- Chain Y
- 5S ribosomal RNA; 5S rRNA
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