IL_4U67_026

3D structure

PDB id

4U67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

GA*UCC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U67_026 not in the Motif Atlas

Geometric match to IL_7A0S_028

Geometric discrepancy: 0.103

The information below is about IL_7A0S_028

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

68

Unit IDs

4U67|1|X|G|875
4U67|1|X|A|876
*
4U67|1|X|U|925
4U67|1|X|C|926
4U67|1|X|C|927

Current chains

Chain X

23s RNA

Nearby chains

Chain J

50S ribosomal protein L16

Chain S

50S ribosomal protein L25

Chain T

50S ribosomal protein L27

Chain Y

5S ribosomal RNA; 5S rRNA