IL_4U67_027
3D structure
- PDB id
- 4U67 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.65 Å
Loop
- Sequence
- GCACU*AAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4U67_027 not in the Motif Atlas
- Homologous match to IL_4WF9_033
- Geometric discrepancy: 0.1826
- The information below is about IL_4WF9_033
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_16301.2
- Basepair signature
- cWW-cWS-tWH-R-L-R-cWW
- Number of instances in this motif group
- 10
Unit IDs
4U67|1|X|G|877
4U67|1|X|C|878
4U67|1|X|A|879
4U67|1|X|C|880
4U67|1|X|U|881
*
4U67|1|X|A|921
4U67|1|X|A|922
4U67|1|X|A|923
4U67|1|X|C|924
Current chains
- Chain X
- 23s RNA
Nearby chains
- Chain J
- 50S ribosomal protein L16
- Chain S
- 50S ribosomal protein L25
- Chain Y
- 5S ribosomal RNA; 5S rRNA
Coloring options: