IL_4U67_028

3D structure

PDB id

4U67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

ACAA*UUAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U67_028 not in the Motif Atlas

Geometric match to IL_4V9F_036

Geometric discrepancy: 0.317

The information below is about IL_4V9F_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02203.1

Basepair signature

cWW-cSW-cWW-cWW

Number of instances in this motif group

1

Unit IDs

4U67|1|X|A|883
4U67|1|X|C|884
4U67|1|X|A|885
4U67|1|X|A|886
*
4U67|1|X|U|916
4U67|1|X|U|917
4U67|1|X|A|918
4U67|1|X|U|919

Current chains

Chain X

23s RNA

Nearby chains

Chain J

50S ribosomal protein L16

Chain S

50S ribosomal protein L25