IL_4U67_033

3D structure

PDB id

4U67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

CUCAGUG*CUCAAG

Length

13 nucleotides

Bulged bases

4U67|1|X|C|1152, 4U67|1|X|A|1154

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U67_033 not in the Motif Atlas

Homologous match to IL_4WF9_039

Geometric discrepancy: 0.1428

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

4U67|1|X|C|1029
4U67|1|X|U|1030
4U67|1|X|C|1031
4U67|1|X|A|1032
4U67|1|X|G|1033
4U67|1|X|U|1034
4U67|1|X|G|1035
*
4U67|1|X|C|1150
4U67|1|X|U|1151
4U67|1|X|C|1152
4U67|1|X|A|1153
4U67|1|X|A|1154
4U67|1|X|G|1155

Current chains

Chain X

23s RNA

Nearby chains

Chain E

50S ribosomal protein L6

Chain G

50S ribosomal protein L13