IL_4U67_034
3D structure
- PDB id
- 4U67 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.65 Å
Loop
- Sequence
- GGUUAAG*CGAAAAUGAUCGGGGC
- Length
- 23 nucleotides
- Bulged bases
- 4U67|1|X|U|1037, 4U67|1|X|A|1138, 4U67|1|X|U|1141
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4U67_034 not in the Motif Atlas
- Geometric match to IL_7A0S_037
- Geometric discrepancy: 0.0767
- The information below is about IL_7A0S_037
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.4
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
4U67|1|X|G|1035
4U67|1|X|G|1036
4U67|1|X|U|1037
4U67|1|X|U|1038
4U67|1|X|A|1039
4U67|1|X|A|1040
4U67|1|X|G|1041
*
4U67|1|X|C|1135
4U67|1|X|G|1136
4U67|1|X|A|1137
4U67|1|X|A|1138
4U67|1|X|A|1139
4U67|1|X|A|1140
4U67|1|X|U|1141
4U67|1|X|G|1142
4U67|1|X|A|1143
4U67|1|X|U|1144
4U67|1|X|C|1145
4U67|1|X|G|1146
4U67|1|X|G|1147
4U67|1|X|G|1148
4U67|1|X|G|1149
4U67|1|X|C|1150
Current chains
- Chain X
- 23s RNA
Nearby chains
- Chain B
- 50S ribosomal protein L3
- Chain G
- 50S ribosomal protein L13
- Chain J
- 50S ribosomal protein L16
- Chain Y
- 5S ribosomal RNA; 5S rRNA
Coloring options: