IL_4U67_064

3D structure

PDB id

4U67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

UG*UGAA

Length

6 nucleotides

Bulged bases

4U67|1|X|G|1882, 4U67|1|X|A|1883

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U67_064 not in the Motif Atlas

Homologous match to IL_5J7L_315

Geometric discrepancy: 0.1202

The information below is about IL_5J7L_315

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

4U67|1|X|U|1833
4U67|1|X|G|1834
*
4U67|1|X|U|1881
4U67|1|X|G|1882
4U67|1|X|A|1883
4U67|1|X|A|1884

Current chains

Chain X

23s RNA

Nearby chains

Chain A

50S ribosomal protein L2