IL_4U67_067

3D structure

PDB id

4U67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

4U67|1|X|A|1921, 4U67|1|X|U|1927

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U67_067 not in the Motif Atlas

Homologous match to IL_7A0S_072

Geometric discrepancy: 0.1194

The information below is about IL_7A0S_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.3

Basepair signature

cWW-L-R-L-cWW-L-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

4U67|1|X|C|1917
4U67|1|X|G|1918
4U67|1|X|A|1919
4U67|1|X|A|1920
4U67|1|X|A|1921
4U67|1|X|U|1922
4U67|1|X|U|1923
4U67|1|X|C|1924
4U67|1|X|C|1925
4U67|1|X|U|1926
4U67|1|X|U|1927
4U67|1|X|G|1928
*
4U67|1|X|C|1944
4U67|1|X|C|1945
4U67|1|X|U|1946
4U67|1|X|G|1947

Current chains

Chain X

23s RNA

Nearby chains