IL_4U67_072

3D structure

PDB id

4U67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

UAG*CGGG

Length

7 nucleotides

Bulged bases

4U67|1|X|G|2217

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U67_072 not in the Motif Atlas

Homologous match to IL_7A0S_077

Geometric discrepancy: 0.1219

The information below is about IL_7A0S_077

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_87316.3

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

4U67|1|X|U|2064
4U67|1|X|A|2065
4U67|1|X|G|2066
*
4U67|1|X|C|2215
4U67|1|X|G|2216
4U67|1|X|G|2217
4U67|1|X|G|2218

Current chains

Chain X

23s RNA

Nearby chains

Chain A

50S ribosomal protein L2

Chain U

50S ribosomal protein L28