IL_4U67_083

3D structure

PDB id

4U67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

4U67|1|X|G|2555, 4U67|1|X|A|2556

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U67_083 not in the Motif Atlas

Geometric match to IL_7A0S_089

Geometric discrepancy: 0.0723

The information below is about IL_7A0S_089

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

4U67|1|X|C|2489
4U67|1|X|U|2490
4U67|1|X|C|2491
*
4U67|1|X|G|2553
4U67|1|X|C|2554
4U67|1|X|G|2555
4U67|1|X|A|2556
4U67|1|X|G|2557

Current chains

Chain X

23s RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain Z

50S ribosomal protein L32