IL_4U67_084

3D structure

PDB id

4U67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

CG*CACG

Length

6 nucleotides

Bulged bases

4U67|1|X|A|2551, 4U67|1|X|C|2552

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U67_084 not in the Motif Atlas

Homologous match to IL_7A0S_090

Geometric discrepancy: 0.0813

The information below is about IL_7A0S_090

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_44609.3

Basepair signature

cWW-cWW

Number of instances in this motif group

26

Unit IDs

4U67|1|X|C|2491
4U67|1|X|G|2492
*
4U67|1|X|C|2550
4U67|1|X|A|2551
4U67|1|X|C|2552
4U67|1|X|G|2553

Current chains

Chain X

23s RNA

Nearby chains

Chain B

50S ribosomal protein L3