IL_4U67_111

3D structure

PDB id

4U67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

CG*CGG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U67_111 not in the Motif Atlas

Geometric match to IL_5TBW_070

Geometric discrepancy: 0.2054

The information below is about IL_5TBW_070

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_05035.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

38

Unit IDs

4U67|1|X|C|2655
4U67|1|X|G|2656
*
4U67|1|X|C|2710
4U67|1|X|G|2711
4U67|1|X|G|2712

Current chains

Chain X

23s RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain H

50S ribosomal protein L14