IL_4U67_115

3D structure

PDB id

4U67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

GGAAG*CGC

Length

8 nucleotides

Bulged bases

4U67|1|X|G|1345

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U67_115 not in the Motif Atlas

Homologous match to IL_7A0S_047

Geometric discrepancy: 0.1162

The information below is about IL_7A0S_047

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_06671.2

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

11

Unit IDs

4U67|1|X|G|1332
4U67|1|X|G|1333
4U67|1|X|A|1334
4U67|1|X|A|1335
4U67|1|X|G|1336
*
4U67|1|X|C|1344
4U67|1|X|G|1345
4U67|1|X|C|1346

Current chains

Chain X

23s RNA

Nearby chains

Chain P

50S ribosomal protein L22