IL_4U6F_064

3D structure

PDB id

4U6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T-2 toxin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGCCUGA*UGCAGGCC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U6F|1|1|G|1560
4U6F|1|1|G|1561
4U6F|1|1|C|1562
4U6F|1|1|C|1563
4U6F|1|1|U|1564
4U6F|1|1|G|1565
4U6F|1|1|A|1566
*
4U6F|1|1|U|1572
4U6F|1|1|G|1573
4U6F|1|1|C|1574
4U6F|1|1|A|1575
4U6F|1|1|G|1576
4U6F|1|1|G|1577
4U6F|1|1|C|1578
4U6F|1|1|C|1579

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain L2

60S ribosomal protein L2-A

Chain L8

60S ribosomal protein L8-A

Chain N5

60S ribosomal protein L25