IL_4U6F_178

3D structure

PDB id

4U6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T-2 toxin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UUGUCAG*CUUGGAUUUA

Length

17 nucleotides

Bulged bases

4U6F|1|2|G|913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U6F_178 not in the Motif Atlas

Homologous match to IL_8C3A_440

Geometric discrepancy: 0.3081

The information below is about IL_8C3A_440

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_22252.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

4U6F|1|2|U|893
4U6F|1|2|U|894
4U6F|1|2|G|895
4U6F|1|2|U|896
4U6F|1|2|C|897
4U6F|1|2|A|898
4U6F|1|2|G|899
*
4U6F|1|2|C|910
4U6F|1|2|U|911
4U6F|1|2|U|912
4U6F|1|2|G|913
4U6F|1|2|G|914
4U6F|1|2|A|915
4U6F|1|2|U|916
4U6F|1|2|U|917
4U6F|1|2|U|918
4U6F|1|2|A|919

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain C4

40S ribosomal protein S14-A

Chain S1

40S ribosomal protein S1-A