IL_4UPY_012

3D structure

PDB id

4UPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

CGAGUAG*CGAAAG

Length

13 nucleotides

Bulged bases

4UPY|1|C|G|256, 4UPY|1|C|A|276

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UPY|1|C|C|255
4UPY|1|C|G|256
4UPY|1|C|A|257
4UPY|1|C|G|258
4UPY|1|C|U|259
4UPY|1|C|A|260
4UPY|1|C|G|261
*
4UPY|1|C|C|272
4UPY|1|C|G|273
4UPY|1|C|A|274
4UPY|1|C|A|275
4UPY|1|C|A|276
4UPY|1|C|G|277

Current chains

Chain C

HCV-IRES

Nearby chains