IL_4UPZ_005

3D structure

PDB id

4UPZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CGC*GAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UPZ_005 not in the Motif Atlas

Geometric match to IL_8CRE_432

Geometric discrepancy: 0.3181

The information below is about IL_8CRE_432

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.4

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

62

Unit IDs

4UPZ|1|C|C|67
4UPZ|1|C|G|68
4UPZ|1|C|C|69
*
4UPZ|1|C|G|98
4UPZ|1|C|A|99
4UPZ|1|C|G|100

Current chains

Chain C

HCV-IRES

Nearby chains