IL_4UPZ_012

3D structure

PDB id

4UPZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CGAGUAG*CGAAAG

Length

13 nucleotides

Bulged bases

4UPZ|1|C|G|256, 4UPZ|1|C|A|276

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UPZ|1|C|C|255
4UPZ|1|C|G|256
4UPZ|1|C|A|257
4UPZ|1|C|G|258
4UPZ|1|C|U|259
4UPZ|1|C|A|260
4UPZ|1|C|G|261
*
4UPZ|1|C|C|272
4UPZ|1|C|G|273
4UPZ|1|C|A|274
4UPZ|1|C|A|275
4UPZ|1|C|A|276
4UPZ|1|C|G|277

Current chains

Chain C

HCV-IRES

Nearby chains