3D structure

PDB id
4V4G (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.
Experimental method
X-RAY DIFFRACTION
Resolution
11.5 Å

Loop

Sequence
GUGUAG*UGAGGC
Length
12 nucleotides
Bulged bases
4V4G|1|AA|U|582
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4V4G|1|AA|G|579
4V4G|1|AA|U|580
4V4G|1|AA|G|581
4V4G|1|AA|U|582
4V4G|1|AA|A|583
4V4G|1|AA|G|584
*
4V4G|1|AA|U|757
4V4G|1|AA|G|758
4V4G|1|AA|A|759
4V4G|1|AA|G|760
4V4G|1|AA|G|761
4V4G|1|AA|C|762

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AH
30S ribosomal protein S8
Chain AL
30S ribosomal protein S12
Chain AO
30S ribosomal protein S15
Chain AQ
30S ribosomal protein S17
Chain BB
Large subunit ribosomal RNA; LSU rRNA

Coloring options:

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