IL_4V4G_073

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

GGUG*CUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4G_073 not in the Motif Atlas

Homologous match to IL_7A0S_019

Geometric discrepancy: 0.5729

The information below is about IL_7A0S_019

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

4V4G|1|BB|G|751
4V4G|1|BB|G|752
4V4G|1|BB|U|753
4V4G|1|BB|G|754
*
4V4G|1|BB|C|769
4V4G|1|BB|U|770
4V4G|1|BB|C|771

Current chains

Chain BB

23S RIBOSOMAL RNA

Nearby chains

Chain B4

50S ribosomal protein L34

Chain BE

50S ribosomal protein L3