IL_4V4G_142

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

GGAAGAAGC*GUGUAAAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4G_142 not in the Motif Atlas

Homologous match to IL_6CZR_129

Geometric discrepancy: 0.4765

The information below is about IL_6CZR_129

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_58819.1

Basepair signature

cWW-L-R-tWH-R-L-tHW-tSS-R-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

4V4G|1|CA|G|409
4V4G|1|CA|G|410
4V4G|1|CA|A|411
4V4G|1|CA|A|412
4V4G|1|CA|G|413
4V4G|1|CA|A|414
4V4G|1|CA|A|415
4V4G|1|CA|G|416
4V4G|1|CA|C|417
*
4V4G|1|CA|G|426
4V4G|1|CA|U|427
4V4G|1|CA|G|428
4V4G|1|CA|U|429
4V4G|1|CA|A|430
4V4G|1|CA|A|431
4V4G|1|CA|A|432
4V4G|1|CA|C|433

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CD

30S ribosomal protein S4