3D structure

PDB id
4V4G (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.
Experimental method
X-RAY DIFFRACTION
Resolution
11.5 Å

Loop

Sequence
GGAAGAAGC*GUGUAAAC
Length
17 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V4G_142 not in the Motif Atlas
Homologous match to IL_6CZR_129
Geometric discrepancy: 0.4765
The information below is about IL_6CZR_129
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_58819.1
Basepair signature
cWW-L-R-tWH-R-L-tHW-tSS-R-L-R-L-cWW
Number of instances in this motif group
1

Unit IDs

4V4G|1|CA|G|409
4V4G|1|CA|G|410
4V4G|1|CA|A|411
4V4G|1|CA|A|412
4V4G|1|CA|G|413
4V4G|1|CA|A|414
4V4G|1|CA|A|415
4V4G|1|CA|G|416
4V4G|1|CA|C|417
*
4V4G|1|CA|G|426
4V4G|1|CA|U|427
4V4G|1|CA|G|428
4V4G|1|CA|U|429
4V4G|1|CA|A|430
4V4G|1|CA|A|431
4V4G|1|CA|A|432
4V4G|1|CA|C|433

Current chains

Chain CA
16S ribosomal RNA

Nearby chains

Chain CD
30S ribosomal protein S4

Coloring options:


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