IL_4V4G_212

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

GCAUAGACAG*UCGAGU

Length

16 nucleotides

Bulged bases

4V4G|1|DB|A|1055, 4V4G|1|DB|U|1056, 4V4G|1|DB|A|1057, 4V4G|1|DB|C|1120

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4G|1|DB|G|1053
4V4G|1|DB|C|1054
4V4G|1|DB|A|1055
4V4G|1|DB|U|1056
4V4G|1|DB|A|1057
4V4G|1|DB|G|1058
4V4G|1|DB|A|1059
4V4G|1|DB|C|1060
4V4G|1|DB|A|1061
4V4G|1|DB|G|1062
*
4V4G|1|DB|U|1119
4V4G|1|DB|C|1120
4V4G|1|DB|G|1121
4V4G|1|DB|A|1122
4V4G|1|DB|G|1123
4V4G|1|DB|U|1124

Current chains

Chain DB

23S RIBOSOMAL RNA

Nearby chains

Chain D6

50S ribosomal protein L36