IL_4V4G_220

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

GAGAAC*GAC

Length

9 nucleotides

Bulged bases

4V4G|1|DB|G|1670

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4G_220 not in the Motif Atlas

Homologous match to IL_5J7L_304

Geometric discrepancy: 0.3678

The information below is about IL_5J7L_304

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_12566.4

Basepair signature

cWW-L-tHS-L-cWW-L

Number of instances in this motif group

5

Unit IDs

4V4G|1|DB|G|1668
4V4G|1|DB|A|1669
4V4G|1|DB|G|1670
4V4G|1|DB|A|1671
4V4G|1|DB|A|1672
4V4G|1|DB|C|1673
*
4V4G|1|DB|G|1987
4V4G|1|DB|A|1988
4V4G|1|DB|C|1989

Current chains

Chain DB

23S RIBOSOMAL RNA

Nearby chains

Chain DE

50S ribosomal protein L3

Chain DO

50S ribosomal protein L17