IL_4V4G_284

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

CGGG*UUG

Length

7 nucleotides

Bulged bases

4V4G|1|EA|G|926

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4G_284 not in the Motif Atlas

Geometric match to IL_5E81_401

Geometric discrepancy: 0.3794

The information below is about IL_5E81_401

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42997.3

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

20

Unit IDs

4V4G|1|EA|C|924
4V4G|1|EA|G|925
4V4G|1|EA|G|926
4V4G|1|EA|G|927
*
4V4G|1|EA|U|1390
4V4G|1|EA|U|1391
4V4G|1|EA|G|1392

Current chains

Chain EA

16S ribosomal RNA

Nearby chains

Chain EE

30S ribosomal protein S5

Chain Ea

protein Y