IL_4V4G_339

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

AGUCCGCGGAGAAGCCAUAC*GAGUGGUGGAGCCGACU

Length

37 nucleotides

Bulged bases

4V4G|1|FB|C|1219, 4V4G|1|FB|A|1224, 4V4G|1|FB|A|1233

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4G|1|FB|A|1215
4V4G|1|FB|G|1216
4V4G|1|FB|U|1217
4V4G|1|FB|C|1218
4V4G|1|FB|C|1219
4V4G|1|FB|G|1220
4V4G|1|FB|C|1221
4V4G|1|FB|G|1222
4V4G|1|FB|G|1223
4V4G|1|FB|A|1224
4V4G|1|FB|G|1225
4V4G|1|FB|A|1226
4V4G|1|FB|A|1227
4V4G|1|FB|G|1228
4V4G|1|FB|C|1229
4V4G|1|FB|C|1230
4V4G|1|FB|A|1231
4V4G|1|FB|U|1232
4V4G|1|FB|A|1233
4V4G|1|FB|C|1234
*
4V4G|1|FB|G|1241
4V4G|1|FB|A|1242
4V4G|1|FB|G|1243
4V4G|1|FB|U|1244
4V4G|1|FB|G|1245
4V4G|1|FB|G|1246
4V4G|1|FB|U|1247
4V4G|1|FB|G|1248
4V4G|1|FB|G|1249
4V4G|1|FB|A|1250
4V4G|1|FB|G|1251
4V4G|1|FB|C|1252
4V4G|1|FB|C|1253
4V4G|1|FB|G|1254
4V4G|1|FB|A|1255
4V4G|1|FB|C|1256
4V4G|1|FB|U|1257

Current chains

Chain FB

23S RIBOSOMAL RNA

Nearby chains

Chain FF

50S ribosomal protein L4

Chain FM

50S ribosomal protein L15

Chain FR

50S ribosomal protein L20

Chain FS

50S ribosomal protein L21

Chain FT

50S ribosomal protein L22