IL_4V4G_374

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

GACGUGGUGCGUAGGAUAG*CCUCUACUUU

Length

29 nucleotides

Bulged bases

4V4G|1|FB|C|3111, 4V4G|1|FB|G|3112, 4V4G|1|FB|G|3116, 4V4G|1|FB|U|3118, 4V4G|1|FB|C|3184

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4G|1|FB|G|3102
4V4G|1|FB|A|3103
4V4G|1|FB|C|3104
4V4G|1|FB|G|3105
4V4G|1|FB|U|3106
4V4G|1|FB|G|3107
4V4G|1|FB|G|3108
4V4G|1|FB|U|3109
4V4G|1|FB|G|3110
4V4G|1|FB|C|3111
4V4G|1|FB|G|3112
4V4G|1|FB|U|3113
4V4G|1|FB|A|3114
4V4G|1|FB|G|3115
4V4G|1|FB|G|3116
4V4G|1|FB|A|3117
4V4G|1|FB|U|3118
4V4G|1|FB|A|3119
4V4G|1|FB|G|3120
*
4V4G|1|FB|C|3178
4V4G|1|FB|C|3179
4V4G|1|FB|U|3180
4V4G|1|FB|C|3181
4V4G|1|FB|U|3182
4V4G|1|FB|A|3183
4V4G|1|FB|C|3184
4V4G|1|FB|U|3185
4V4G|1|FB|U|3186
4V4G|1|FB|U|3187

Current chains

Chain FB

23S RIBOSOMAL RNA

Nearby chains

Chain F7

50S ribosomal protein L1P

Chain FI

50S ribosomal protein L9