IL_4V4G_443

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

GAC*GC

Length

5 nucleotides

Bulged bases

4V4G|1|HB|A|601

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4G_443 not in the Motif Atlas

Homologous match to IL_7A0S_012

Geometric discrepancy: 0.4637

The information below is about IL_7A0S_012

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

4V4G|1|HB|G|600
4V4G|1|HB|A|601
4V4G|1|HB|C|602
*
4V4G|1|HB|G|678
4V4G|1|HB|C|679

Current chains

Chain HB

23S RIBOSOMAL RNA

Nearby chains

Chain H5

50S ribosomal protein L35

Chain HF

50S ribosomal protein L4

Chain HM

50S ribosomal protein L15