3D structure

PDB id
4V4G (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.
Experimental method
X-RAY DIFFRACTION
Resolution
11.5 Å

Loop

Sequence
GGAA*UC
Length
6 nucleotides
Bulged bases
4V4G|1|HB|G|1684, 4V4G|1|HB|A|1685
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V4G_472 not in the Motif Atlas
Homologous match to IL_5J7L_306
Geometric discrepancy: 0.5867
The information below is about IL_5J7L_306
Detailed Annotation
Major groove platform; stack outside cWW
Broad Annotation
Major groove platform
Motif group
IL_50694.7
Basepair signature
cWW-tSH-cWW-L
Number of instances in this motif group
27

Unit IDs

4V4G|1|HB|G|1683
4V4G|1|HB|G|1684
4V4G|1|HB|A|1685
4V4G|1|HB|A|1686
*
4V4G|1|HB|U|1976
4V4G|1|HB|C|1977

Current chains

Chain HB
23S RIBOSOMAL RNA

Nearby chains

Chain HE
50S ribosomal protein L3
Chain HL
50S ribosomal protein L14

Coloring options:


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