IL_4V4G_486

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

GUAC*GGC

Length

7 nucleotides

Bulged bases

4V4G|1|HB|A|2381

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4G_486 not in the Motif Atlas

Geometric match to IL_5ML7_010

Geometric discrepancy: 0.3027

The information below is about IL_5ML7_010

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

4V4G|1|HB|G|2379
4V4G|1|HB|U|2380
4V4G|1|HB|A|2381
4V4G|1|HB|C|2382
*
4V4G|1|HB|G|2393
4V4G|1|HB|G|2394
4V4G|1|HB|C|2395

Current chains

Chain HB

23S RIBOSOMAL RNA

Nearby chains

Chain H3

50S ribosomal protein L33

Chain H5

50S ribosomal protein L35

Chain HM

50S ribosomal protein L15