IL_4V4G_548

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4G_548 not in the Motif Atlas

Homologous match to IL_5J7L_363

Geometric discrepancy: 0.5212

The information below is about IL_5J7L_363

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V4G|1|IA|G|1405
4V4G|1|IA|U|1406
4V4G|1|IA|C|1407
*
4V4G|1|IA|G|1494
4V4G|1|IA|U|1495
4V4G|1|IA|C|1496

Current chains

Chain IA

16S ribosomal RNA

Nearby chains

Chain Ia

protein Y

Chain JB

Large subunit ribosomal RNA; LSU rRNA