IL_4V4G_550

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

CAU*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4G_550 not in the Motif Atlas

Homologous match to IL_4LFB_059

Geometric discrepancy: 0.3195

The information below is about IL_4LFB_059

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V4G|1|IA|C|1412
4V4G|1|IA|A|1413
4V4G|1|IA|U|1414
*
4V4G|1|IA|G|1486
4V4G|1|IA|G|1487
4V4G|1|IA|G|1488

Current chains

Chain IA

16S ribosomal RNA

Nearby chains

Chain IL

30S ribosomal protein S12

Chain JB

Large subunit ribosomal RNA; LSU rRNA