IL_4V4G_575

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

CAU*ACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4G_575 not in the Motif Atlas

Homologous match to IL_7A0S_026

Geometric discrepancy: 0.4021

The information below is about IL_7A0S_026

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V4G|1|JB|C|864
4V4G|1|JB|A|865
4V4G|1|JB|U|866
*
4V4G|1|JB|A|936
4V4G|1|JB|C|937
4V4G|1|JB|G|938

Current chains

Chain JB

23S RIBOSOMAL RNA

Nearby chains

Chain JA

5S ribosomal RNA; 5S rRNA

Chain JX

50S ribosomal protein L27

Chain JZ

50S ribosomal protein L30