IL_4V4G_582

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

GCUAAG*CGAAGC

Length

12 nucleotides

Bulged bases

4V4G|1|JB|A|1167

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4G_582 not in the Motif Atlas

Geometric match to IL_4V9F_096

Geometric discrepancy: 0.3312

The information below is about IL_4V9F_096

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4V4G|1|JB|G|1008
4V4G|1|JB|C|1009
4V4G|1|JB|U|1010
4V4G|1|JB|A|1011
4V4G|1|JB|A|1012
4V4G|1|JB|G|1013
*
4V4G|1|JB|C|1164
4V4G|1|JB|G|1165
4V4G|1|JB|A|1166
4V4G|1|JB|A|1167
4V4G|1|JB|G|1168
4V4G|1|JB|C|1169

Current chains

Chain JB

23S RIBOSOMAL RNA

Nearby chains

Chain JA

5S ribosomal RNA; 5S rRNA

Chain JR

50S ribosomal protein L20

Chain JS

50S ribosomal protein L21

Chain JZ

50S ribosomal protein L30