IL_4V4G_591

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

CUAAG*CGAUG

Length

10 nucleotides

Bulged bases

4V4G|1|JB|U|1392

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4G_591 not in the Motif Atlas

Homologous match to IL_4WF9_051

Geometric discrepancy: 0.5545

The information below is about IL_4WF9_051

Detailed Annotation

UAA/GAN

Broad Annotation

UAA/GAN

Motif group

IL_89021.2

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4V4G|1|JB|C|1364
4V4G|1|JB|U|1365
4V4G|1|JB|A|1366
4V4G|1|JB|A|1367
4V4G|1|JB|G|1368
*
4V4G|1|JB|C|1389
4V4G|1|JB|G|1390
4V4G|1|JB|A|1391
4V4G|1|JB|U|1392
4V4G|1|JB|G|1393

Current chains

Chain JB

23S RIBOSOMAL RNA

Nearby chains

Chain J4

50S ribosomal protein L34

Chain JD

50S ribosomal protein L2