IL_4V4G_592

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

UGAGG*CGCAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4G_592 not in the Motif Atlas

Homologous match to IL_5J7L_293

Geometric discrepancy: 0.3546

The information below is about IL_5J7L_293

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

4V4G|1|JB|U|1370
4V4G|1|JB|G|1371
4V4G|1|JB|A|1372
4V4G|1|JB|G|1373
4V4G|1|JB|G|1374
*
4V4G|1|JB|C|1383
4V4G|1|JB|G|1384
4V4G|1|JB|C|1385
4V4G|1|JB|A|1386
4V4G|1|JB|G|1387

Current chains

Chain JB

23S RIBOSOMAL RNA

Nearby chains

Chain J1

50S ribosomal protein L31

Chain JD

50S ribosomal protein L2