IL_4V4G_605

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

4V4G|1|JB|U|2051

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4G_605 not in the Motif Atlas

Homologous match to IL_4WF9_080

Geometric discrepancy: 0.3464

The information below is about IL_4WF9_080

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

4V4G|1|JB|G|2050
4V4G|1|JB|U|2051
4V4G|1|JB|G|2052
*
4V4G|1|JB|C|2421
4V4G|1|JB|C|2422

Current chains

Chain JB

23S RIBOSOMAL RNA

Nearby chains

Chain JF

50S ribosomal protein L4