IL_4V4G_665

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

UAUAG*CGGGUA

Length

11 nucleotides

Bulged bases

4V4G|1|BB|G|2217

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4G_665 not in the Motif Atlas

Geometric match to IL_4WFL_001

Geometric discrepancy: 0.362

The information below is about IL_4WFL_001

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

4V4G|1|BB|U|2062
4V4G|1|BB|A|2063
4V4G|1|BB|U|2064
4V4G|1|BB|A|2065
4V4G|1|BB|G|2066
*
4V4G|1|BB|C|2215
4V4G|1|BB|G|2216
4V4G|1|BB|G|2217
4V4G|1|BB|G|2218
4V4G|1|BB|U|2219
4V4G|1|BB|A|2220

Current chains

Chain BB

23S RIBOSOMAL RNA

Nearby chains

Chain B1

50S ribosomal protein L31

Chain BD

50S ribosomal protein L2