IL_4V4G_670

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

CGAAGAAC*GGGAG

Length

13 nucleotides

Bulged bases

4V4G|1|BB|A|3132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4G_670 not in the Motif Atlas

Homologous match to IL_5J7L_330

Geometric discrepancy: 0.504

The information below is about IL_5J7L_330

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

4V4G|1|BB|C|3129
4V4G|1|BB|G|3130
4V4G|1|BB|A|3131
4V4G|1|BB|A|3132
4V4G|1|BB|G|3133
4V4G|1|BB|A|3134
4V4G|1|BB|A|3135
4V4G|1|BB|C|3136
*
4V4G|1|BB|G|3155
4V4G|1|BB|G|3156
4V4G|1|BB|G|3157
4V4G|1|BB|A|3158
4V4G|1|BB|G|3159

Current chains

Chain BB

23S RIBOSOMAL RNA

Nearby chains