IL_4V4G_700

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

4V4G|1|DB|A|689, 4V4G|1|DB|G|814, 4V4G|1|DB|G|818

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4G_700 not in the Motif Atlas

Homologous match to IL_4WF9_021

Geometric discrepancy: 0.5973

The information below is about IL_4WF9_021

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

4V4G|1|DB|G|687
4V4G|1|DB|A|688
4V4G|1|DB|A|689
4V4G|1|DB|A|690
4V4G|1|DB|C|691
*
4V4G|1|DB|G|812
4V4G|1|DB|A|813
4V4G|1|DB|G|814
4V4G|1|DB|A|815
4V4G|1|DB|U|816
4V4G|1|DB|A|817
4V4G|1|DB|G|818
4V4G|1|DB|C|819

Current chains

Chain DB

23S RIBOSOMAL RNA

Nearby chains

Chain DF

50S ribosomal protein L4

Chain DM

50S ribosomal protein L15